The subclonal footprint of pervasive early dissemination in pancreatic cancer
Authors: Yuanchang Fang, Michelle Chan-Seng-Yue, Karen Ng, Amy Zhang, Tuan Hoang, Gun Ho Jang, Sabiq Chaudhary, Catia Gaspar, Eugenia Flores-Figueroa, Daniela Bevacqua, Stephanie Ramotar, Ayelet Borgida, Shawn Hutchinson, Anna Dodd, Ayah Elqaderi, Maryam Monajemzadeh, Yifan Wang, Stanley W. K. Ng, Spring Holter, Barbara T. Grünwald, Julie M. Wilson, Robert C. Grant, Erica S. Tsang, George Zogopoulos, Masoom A. Haider, Grainne M. O’Kane, Jennifer J. Knox, Steven Gallinger, Faiyaz Notta.
Reference: BioRxiv
DOI: 10.1101/2025.11.27.690823
Year: 2025
Transcriptomic classes of BCR-ABL1 lymphoblastic leukemia.
Authors: Jaeseung C. Kim, Michelle Chan-Seng-Yue, Sabrina Ge, Andy G. X. Zeng, Karen Ng, Olga I. Gan, Laura Garcia-Prat, Eugenia Flores-Figueroa, Tristan Woo, Amy Xin Wei Zhang, Andrea Arruda, Shivapriya Chithambaram, Stephanie M. Dobson, Amanda Khoo, Shahbaz Khan, Narmin Ibrahimova, Ann George, Anne Tierens, Johann Hitzler, Thomas Kislinger, John E. Dick, John D. McPherson, Mark D. Minden & Faiyaz Notta.
Reference: Nature
DOI: 10.1038/s41588-023-01429-4
Year: 2023
Transcription phenotypes of pancreatic cancer are driven by genomic events during tumour evolution
Authors: Michelle Chan-Seng-Yue, Jaeseung C. Kim, Gavin W. Wilson, Karen Ng, Eugenia Flores Figueroa, Grainne M. O’Kane, Ashton A. Connor, Robert E. Denroche, Robert C. Grant, Jessica McLeod, Julie M. Wilson, Gun Ho Jang, Amy Zhang, Anna Dodd, Sheng-Ben Liang, Ayelet Borgida, Dianne Chadwick, Sangeetha Kalimuthu, Ilinca Lungu, John M. S. Bartlett, Paul M. Krzyzanowski, Vandana Sandhu, Hervé Tiriac, Fieke E. M. Froeling, Joanna M. Karasinska, James T. Topham, Daniel J. Renouf, David F. Schaeffer, Steven J. M. Jones, Marco A. Marra, Janessa Laskin, Runjan Chetty, Lincoln D. Stein, George Zogopoulos, Benjamin Haibe-Kains, Peter J. Campbell, David A. Tuveson, Jennifer J. Knox, Sandra E. Fischer, Steven Gallinger & Faiyaz Notta.
Reference: Nature
DOI: 10.1038/s41588-019-0566-9
Year: 2020
Cryptic genomic lesions in adverse-risk acute myeloid leukemia identified by integrated whole genome and transcriptome sequencing
Authors: Jaeseung C. Kim, Philip C. Zuzarte, Tracy Murphy, Michelle Chan-Seng-Yue, Andrew M. K. Brown, Paul M. Krzyzanowski, Adam C. Smith, Faiyaz Notta, Mark D. Minden & John D. McPherson.
Reference: Leukemia - Nature
DOI: 10.1038/s41375-019-0546-1
Year: 2020
A genetic roadmap of pancreatic cancer: still evolving
Authors: Faiyaz Notta, Stephan A Hahn, Francisco X Real.
Reference: Gut
DOI: 10.1136/gutjnl-2016-313317
Year: 2019
A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
Authors: Faiyaz Notta, Michelle Chan-Seng-Yue, Mathieu Lemire, Yilong Li, Gavin W. Wilson, Ashton A. Connor, Robert E. Denroche, Sheng-Ben Liang, Andrew M. K. Brown, Jaeseung C. Kim, Tao Wang, Jared T. Simpson, Timothy Beck, Ayelet Borgida, Nicholas Buchner, Dianne Chadwick, Sara Hafezi-Bakhtiari, John E. Dick, Lawrence Heisler, Michael A. Hollingsworth, Emin Ibrahimov, Gun Ho Jang, Jeremy Johns, Lars G. T. Jorgensen, Calvin Law, Olga Ludkovski, Ilinca Lungu, Karen Ng, Danielle Pasternack, Gloria M. Petersen, Liran I. Shlush, Lee Timms, Ming-Sound Tsao, Julie M. Wilson, Christina K. Yung, George Zogopoulos, John M. S. Bartlett, Ludmil B. Alexandrov, Francisco X. Real, Sean P. Cleary, Michael H. Roehrl, John D. McPherson, Lincoln D. Stein, Thomas J. Hudson, Peter J. Campbell & Steven Gallinger.
Reference: Nature
DOI: 10.1038/nature19823
Year: 2016
Distinct routes of lineage development reshape the human blood hierarchy across ontogeny
Authors: Faiyaz Notta, Sasan Zandi, Naoya Takayama, Stephanie Dobson, Olga I. Gan, Gavin Wilson, Kerstin B. Kaufmann, Jessica McLeod, Elisa Laurenti, Cyrille F. Dunant, John D. McPherson, Lincoln D. Stein, Yigal Dror, & John E. Dick.
Reference: Science
Year: 2015
Evolution of human BCR–ABL1 lymphoblastic leukaemia-initiating cells
Authors: Faiyaz Notta, Charles G. Mullighan, Jean C. Y. Wang, Armando Poeppl, Sergei Doulatov, Letha A. Phillips, Jing Ma, Mark D. Minden, James R. Downing & John E. Dick.
Reference: Nature
Year: 2011
