CellNEST reveals cell-cell relay networks using attention mechanisms on spatial transcriptomics
Authors: Fatema Tuz Zohora, Deisha Paliwal, Eugenia Flores-Figueroa, Joshua Li, Tingxiao Gao, Faiyaz Notta, Gregory W Schwartz.
Reference: Nature Methods
DOI: 10.1038/s41592-025-02721-3
Year: 2025
Metastatic medulloblastoma remodels the local leptomeningeal microenvironment to promote further metastatic colonization and growth
Authors: Namal Abeysundara, Alexandra Rasnitsyn, Vernon Fong, Alexander Bahcheli, Randy Van Ommeren, Kyle Juraschka, Maria Vladoiu, Winnie Ong, Bryn Livingston, Pasqualino de Antonellis, Michelle Ly, Borja López Holgado, Olga Sirbu, Shahrzad Bahrampour, Hyun-Kee Min, Jerry Fan, Carolina Nor, Abhirami Visvanathan, Jiao Zhang, Hao Wang, Lei Qin, Ning Huang, Jonelle Pallotta, Tajana Douglas, Esta Mak, Haipeng Su, Karen Ng, Kevin Yang Zhang, Craig Daniels, Calixto-Hope G. Lucas, Charles G. Eberhart, Hailong Liu, Tao Jiang, Faiyaz Notta, Vijay Ramaswamy, Jüri Reimand, Marco Gallo, Jeremy N. Rich, Xiaochong Wu, Xi Huang & Michael D. Taylor.
Reference: Nature Cell Biology
DOI: 10.1038/s41556-025-01660-7
Year: 2025
HMGA2 Expression Predicts Subtype, Survival, and Treatment Outcome in Pancreatic Ductal Adenocarcinoma
Authors: Naomi Yamamoto, Stephanie Dobersch, Ian Loveless, Annie N Samraj, Gun Ho Jang, Miki Haraguchi, Liang-I Kang, Marianna B Ruzinova, Kiran R Vij, Jacqueline L Mudd, Thomas Walsh, Rachael A Safyan, E Gabriela Chiorean, Sunil R Hingorani, Nathan M Bolton, Li Li, Ryan C Fields, David G DeNardo, Faiyaz Notta, Howard C Crawford, Nina G Steele, Sita Kugel.
Reference: Clinical Cancer Research
DOI: 10.1158/1078-0432.CCR-24-2200
Year: 2025
Organoid Profiling Identifies Common Responders to Chemotherapy in Pancreatic Cancer
Authors: Hervé Tiriac; Pascal Belleau; Dannielle D. Engle, Dennis Plenker, Astrid Deschênes, Tim D. D. Somerville, Fieke E. M. Froeling, Richard A. Burkhart, Robert E. Denroche, Gun-Ho Jang, Koji Miyabayashi, C. Megan Young, Hardik Patel, Michelle Ma, Joseph F. LaComb, Randze Lerie D. Palmaira, Ammar A. Javed, Jasmine C. Huynh, Molly Johnson, Kanika Arora, Nicolas Robine, Minita Shah, Rashesh Sanghvi, Austin B. Goetz, Cinthya Y. Lowder, Laura Martello, Else Driehuis, Nicolas LeComte, Gokce Askan, Christine A. Iacobuzio-Donahue, Hans Clevers, Laura D. Wood, Ralph H. Hruban, Elizabeth Thompson, Andrew J. Aguirre, Brian M. Wolpin, Aaron Sasson, Joseph Kim, Maoxin Wu, Juan Carlos Bucobo, Peter Allen, Divyesh V. Sejpal, William Nealon, James D. Sullivan, Jordan M. Winter, Phyllis A. Gimotty, Jean L. Grem, Dominick J. DiMaio, Jonathan M. Buscaglia, Paul M. Grandgenett, Jonathan R. Brody, Michael A. Hollingsworth, Grainne M. O'Kane, Faiyaz Notta, Edward Kim, James M. Crawford, Craig Devoe, Allyson Ocean, Christopher L. Wolfgang, Kenneth H. Yu, Ellen Li, Christopher R. Vakoc, Benjamin Hubert, Sandra E. Fischer, Julie M. Wilson, Richard Moffitt, Jennifer Knox, Alexander Krasnitz, Steven Gallinger, David A. Tuveson.
Reference: Cancer Discovery
DOI:10.1158/2159-8290.CD-18-0349
Year: 2018
